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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2073906_2076200_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2073906 - 2076200
Intron Length:
2295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CATCTTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATCATCAATA
Flanking Amino Acid:
ELDQEDEENSEEDETDSGTM
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.1
0.61
0.9
71.8
37.8
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
54.5
0.14
1.8
65.86
40.5

Associated Gene:

Gene:
STK4
Ensembl Gene ID:
ENSAPLG00000008260
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008623
2066333 - 2108713
42381