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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_211392_213432_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
211392 - 213432
Intron Length:
2041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGCTCCA
5'SS Class:
weak_major
3'SS Sequence:
TGATTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTACTCAAAA
Flanking Amino Acid:
AGVKVPRNFRL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.2
49.8
42.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.9
74.5
40.1
Minor 5ss
33.7
-1.9
3.1
41.9
44.8
Minor BPS
57.6
0.23
1.8
71.97
39

Associated Gene:

Gene:
UBE2V1
Ensembl Gene ID:
ENSAPLG00000027469
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038982
211388 - 217384
5997