About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2139818_2139879_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2139818 - 2139879
Intron Length:
62

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGCACCC
5'SS Class:
weak_major
3'SS Sequence:
TCCTGGGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAG
U12 Branch Point Sequence:
CCTCTGGGGACC
Flanking Amino Acid:
GGRRGVQGDGPPHLAGTAWS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.2
41.3
40
Major BPS
41.2
-0.5
1.4
45
36.7
Major PPT
68.5
0.42
1
60.9
40.2
Minor 5ss
31.5
-2.1
3.3
34.4
41.5
Minor BPS
34.4
-1.2
2.4
42.57
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017021
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022855
2138804 - 2139957
1154