Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2145906_2146160_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2145906 - 2146160

Intron Length:

255

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTAAAAACC

5'SS Class:

weak_major

3'SS Sequence:

GCTTCCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGTGAT

U12 Branch Point Sequence:

GAGGCATGAAGG

Flanking Amino Acid:

QLNADRKTCSPIDACADGRH

Intron Amino Acid Position:

256

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.2

0.15

1.3

57.1

40.4

Major BPS

57.3

0.18

1.3

48.8

46.3

Major PPT

72.7

0.51

0.8

65.9

30.2

Minor 5ss

-1.6

49.5

39.7

Minor BPS

40.2

-0.8

39.46

43.4

Associated Gene:

Gene:

MATN4

Ensembl Gene ID:

ENSAPLG00000008140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043779

2142354 - 2160565

18212

ENSAPLT00000008448

2143356 - 2148452

5097