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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2148453_2160519_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2148453 - 2160519
Intron Length:
12067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCAGCACTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.9
0.72
0.7
76.4
25.6
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
45.4
-0.3
2
57.12
42

Associated Gene:

Gene:
MATN4
Ensembl Gene ID:
ENSAPLG00000008140
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043779
2142354 - 2160565
18212