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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2161959_2162933_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2161959 - 2162933
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
CTTGTCTCCACA
Flanking Amino Acid:
VAQKSYGNEKRFFCPPPCVY
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
78.3
0.64
0.8
72.4
32.4
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
47.4
-0.2
2.1
62.43
44.3

Associated Gene:

Gene:
RBPJL
Ensembl Gene ID:
ENSAPLG00000008031
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008359
2150568 - 2167259
16692