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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2164894_2165098_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2164894 - 2165098
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
CCTTCCCCCGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTGGCACTGACT
Flanking Amino Acid:
RQWAAFTLHLADERYTRSEF
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
63.9
0.31
0.9
63.9
24.8
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
46.3
-0.2
2
66.02
44.3

Associated Gene:

Gene:
RBPJL
Ensembl Gene ID:
ENSAPLG00000008031
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008359
2150568 - 2167259
16692