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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2166320_2166756_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2166320 - 2166756
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCACTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATTC
Flanking Amino Acid:
FGDVEAETMYRSPKSLVCVV
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
70.5
0.46
0.9
61.3
39.9
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
64.9
0.45
1.8
78.68
37.2

Associated Gene:

Gene:
RBPJL
Ensembl Gene ID:
ENSAPLG00000008031
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008359
2150568 - 2167259
16692