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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2186337_2188973_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2186337 - 2188973
Intron Length:
2637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
AACTGTCTAATT
Flanking Amino Acid:
AAAIAKAGIPVFAWKGETDE
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
82.3
0.73
0.8
77.5
31.2
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
47
-0.1
2
63.7
41.2

Associated Gene:

Gene:
AHCY
Ensembl Gene ID:
ENSAPLG00000007974
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008290
2181549 - 2206800
25252
ENSAPLT00000048265
2182420 - 2206800
24381
ENSAPLT00000024892
2182420 - 2383202
200783
ENSAPLT00000021264
2181549 - 2423615
242067