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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2194671_2195478_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2194671 - 2195478
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAG
5'SS Class:
major
3'SS Sequence:
ATTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCTGAAACT
Flanking Amino Acid:
AINVNDSVTKSKFDNLYGCR
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
62.4
43.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.3
0.75
0.7
81.6
29.6
Minor 5ss
30.2
-2.3
3.2
38.2
46.7
Minor BPS
59.6
0.38
2.3
87.23
39

Associated Gene:

Gene:
AHCY
Ensembl Gene ID:
ENSAPLG00000007974
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048265
2182420 - 2206800
24381
ENSAPLT00000024892
2182420 - 2383202
200783
ENSAPLT00000021264
2181549 - 2423615
242067
ENSAPLT00000008290
2181549 - 2206800
25252