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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2197589_2202437_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2197589 - 2202437
Intron Length:
4849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTGCCTCTAACA
Flanking Amino Acid:
AVEVVNVKPQVDRYTLRNGR
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
77.9
0.63
0.8
70.6
35.2
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
62.1
0.38
1.7
73.56
38.1

Associated Gene:

Gene:
AHCY
Ensembl Gene ID:
ENSAPLG00000007974
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008290
2181549 - 2206800
25252
ENSAPLT00000048265
2182420 - 2206800
24381
ENSAPLT00000024892
2182420 - 2383202
200783
ENSAPLT00000021264
2181549 - 2423615
242067