Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2202633_2383145_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2202633 - 2383145

Intron Length:

180513

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTAG

5'SS Class:

strong_major

3'SS Sequence:

AAAAACAAAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

TTTTCTCTAAAA

Flanking Amino Acid:

SVGVHFLPKKLDEDGRTEIR

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

75.6

36.7

Major BPS

0.57

73.6

28.6

Major PPT

38.8

-0.6

1.6

27.6

34.9

Minor 5ss

36.1

-1.6

3.3

45.9

49.3

Minor BPS

0.53

1.7

81.52

33.2

Associated Gene:

Gene:

AHCY

Ensembl Gene ID:

ENSAPLG00000007974

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021264

2181549 - 2423615

242067

ENSAPLT00000024892

2182420 - 2383202

200783