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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2338097_2339063_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2338097 - 2339063
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTGCTTATCC
Flanking Amino Acid:
EADEEDSRKKDATDDLDDLN
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.8
0.8
0.7
84.6
30.3
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
66.6
0.5
2
82.19
38.3

Associated Gene:

Gene:
EIF2S2
Ensembl Gene ID:
ENSAPLG00000013245
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013814
2337916 - 2345090
7175