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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2342431_2343446_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2342431 - 2343446
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTAAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
LAFLLAELGTSGSIDGNNQL
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71
0.47
1
72.3
36.8
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
EIF2S2
Ensembl Gene ID:
ENSAPLG00000013245
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013814
2337916 - 2345090
7175