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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2343533_2344295_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2343533 - 2344295
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCCTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
QIENVLRRYIKEYVTCHTCR
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.8
80.7
29.7
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
EIF2S2
Ensembl Gene ID:
ENSAPLG00000013245
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013814
2337916 - 2345090
7175