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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2358188_2358445_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
2358188 - 2358445
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACTC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.4
41.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
34.8
-1.7
3.5
50.8
45.7
Minor BPS
74.8
0.76
1.1
77
33.7

Associated Gene:

Gene:
RALY
Ensembl Gene ID:
ENSAPLG00000012983
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032664
2356385 - 2411418
55034