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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2363126_2363950_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2363126 - 2363950
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
GCTCTTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
AGTCCCTGATCC
Flanking Amino Acid:
QIAEEQKLSTEVRKKADGSK
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
77.9
0.63
0.8
71.7
32.8
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
52.7
0.07
1.7
64.67
40

Associated Gene:

Gene:
RALY
Ensembl Gene ID:
ENSAPLG00000012983
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032664
2356385 - 2411418
55034
ENSAPLT00000013526
2356385 - 2432847
76463