About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2364430_2364618_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2364430 - 2364618
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTGTTCTTCACC
Flanking Amino Acid:
YDYYRDDFYDRLFEYRGRVS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
69.2
0.43
0.8
62.3
27.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
68
0.55
1.7
77.46
38.9

Associated Gene:

Gene:
RALY
Ensembl Gene ID:
ENSAPLG00000012983
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032664
2356385 - 2411418
55034
ENSAPLT00000013526
2356385 - 2432847
76463