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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2375704_2379771_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2375704 - 2379771
Intron Length:
4068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GCTTTGTTCATT
Flanking Amino Acid:
NGRVLAGQTLDINMAGEPKP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.5
0.75
0.8
78.2
34.9
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
46.6
-0.1
2.4
67.31
44.3

Associated Gene:

Gene:
RALY
Ensembl Gene ID:
ENSAPLG00000012983
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032664
2356385 - 2411418
55034
ENSAPLT00000013526
2356385 - 2432847
76463