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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2380037_2411265_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2380037 - 2411265
Intron Length:
31229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTGTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ACCTCCCTGACT
Flanking Amino Acid:
KVHSHTQRKRVFKMSLKVQT
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.6
0.75
0.9
82
34.8
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
60.9
0.42
1.7
74.22
42.7

Associated Gene:

Gene:
RALY
Ensembl Gene ID:
ENSAPLG00000012983
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032664
2356385 - 2411418
55034