Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2514939_2515215_F

Intron Information:

Intron Rank:

138984

Intron Class:

major

Intron Phase:

Intron Coordinates:

2514939 - 2515215

Intron Length:

277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTAATGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTTCTTGTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

81.8

38.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

62.7

0.29

1.1

55.9

43.7

Minor 5ss

39.8

-1.1

3.2

51.2

45.5

Minor BPS

47.3

-0.3

55.3

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024815

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039981

2513989 - 2515241

1253