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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2540132_2540812_R

Intron Information:

Intron Rank:
144853
Intron Class:
major
Intron Phase:
Intron Coordinates:
2540132 - 2540812
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TGCTCATATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCTATGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
71.5
0.48
1
62.6
42.5
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
65.6
0.47
1.6
77.03
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025321
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039253
2539355 - 2541194
1840