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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2546667_2547050_F

Intron Information:

Intron Rank:
143422
Intron Class:
major
Intron Phase:
Intron Coordinates:
2546667 - 2547050
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CGTCTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATCCCCTTGACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
74.2
0.55
0.9
69.3
35.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
67.9
0.42
1.4
66.65
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027267
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019188
2545137 - 2547757
2621