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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2658797_2659294_R

Intron Information:

Intron Rank:
139190
Intron Class:
major
Intron Phase:
Intron Coordinates:
2658797 - 2659294
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAAAA
5'SS Class:
major
3'SS Sequence:
ATTATATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TCTTCTATTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
70.7
34.4
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
80.1
0.68
0.9
70.7
44
Minor 5ss
35.2
-1.7
2.7
40.5
45.3
Minor BPS
51.7
0.05
1.9
67.6
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022352
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043404
2657489 - 2659349
1861