Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2745169_2745371_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2745169 - 2745371

Intron Length:

203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACTT

5'SS Class:

strong_major

3'SS Sequence:

ATCTCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATAAAT

U12 Branch Point Sequence:

AAGCCCTTACCT

Flanking Amino Acid:

VPLLQKPVDQVISETKELVS

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.6

33.8

Major BPS

62.2

0.3

1.1

68.9

Major PPT

82.7

0.74

0.8

77.3

30.7

Minor 5ss

32.5

-2

3.3

47.4

Minor BPS

61.3

0.43

1.7

73.31

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012568

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042052

2743157 - 2747183

4027

ENSAPLT00000013084

2743157 - 2747183

4027