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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2747483_2748327_R

Intron Information:

Intron Rank:
140610
Intron Class:
major
Intron Phase:
Intron Coordinates:
2747483 - 2748327
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
CTGTTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.6
0.69
0.8
80.5
31.5
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
57.9
0.32
1.9
82.09
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022999
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040006
2747204 - 2749517
2314