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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2797858_2798644_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2797858 - 2798644
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
ATTTGCTTACTC
Flanking Amino Acid:
AKAMKAAHDNMDIDKVDELM
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
88.8
0.87
0.7
83.2
31.9
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
57.7
0.22
2
72.28
39.5

Associated Gene:

Gene:
CHMP4B
Ensembl Gene ID:
ENSAPLG00000012481
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029745
2794128 - 2807994
13867
ENSAPLT00000029504
2795955 - 2816329
20375
ENSAPLT00000013000
2793391 - 2816329
22939