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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_281190_282224_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
281190 - 282224
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGGG
5'SS Class:
major
3'SS Sequence:
ATTGTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATTAACA
Flanking Amino Acid:
ETTCNGCNKKMFLSKMRSHA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
52.2
44.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79
0.65
0.9
72.8
36.9
Minor 5ss
26.9
-2.7
3.7
37.8
47
Minor BPS
63.5
0.42
1.8
79.01
36.4

Associated Gene:

Gene:
RNF114
Ensembl Gene ID:
ENSAPLG00000020959
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047932
278993 - 283251
4259
ENSAPLT00000019308
278993 - 282923
3931