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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2830424_2831482_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2830424 - 2831482
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGCTGCTGATAC
Flanking Amino Acid:
KNFDLQQHIRSHTGEKPFQC
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.7
0.69
0.8
77.3
31.5
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
40.4
-0.7
2
46.14
42.1

Associated Gene:

Gene:
ZNF341
Ensembl Gene ID:
ENSAPLG00000012237
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012749
2820692 - 2837229
16538