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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2833933_2834575_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2833933 - 2834575
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCCCTGTTCT
Flanking Amino Acid:
PMPAVQPPVQSSLSMHAGAG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.7
0.6
1
72.8
42.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
42.2
-0.5
3.6
78.83
42.8

Associated Gene:

Gene:
ZNF341
Ensembl Gene ID:
ENSAPLG00000012237
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012749
2820692 - 2837229
16538