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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2841250_2841609_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2841250 - 2841609
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTTGTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCTCTCCTAATT
Flanking Amino Acid:
LVMTFLFRSGSLREKLKSIA
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
86
0.81
0.8
80.2
37.3
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
54.8
0.23
1.7
70.49
40.6

Associated Gene:

Gene:
PXMP4
Ensembl Gene ID:
ENSAPLG00000012234
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012728
2840864 - 2843087
2224