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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_285684_285809_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
285684 - 285809
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
ATCCCTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CTTCCCAAAATT
Flanking Amino Acid:
DTKYKDDLFRKFRLIKFYEM
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77.8
0.63
0.8
72.4
31.7
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
51.3
0.12
2
74.18
42.8

Associated Gene:

Gene:
SPATA2
Ensembl Gene ID:
ENSAPLG00000014645
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015255
282787 - 289010
6224