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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_285967_287756_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
285967 - 287756
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CCCACCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
PWKKEFKNIKTYTGPFVYYV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
64.3
0.32
0.8
61.3
29
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
SPATA2
Ensembl Gene ID:
ENSAPLG00000014645
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015255
282787 - 289010
6224