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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2861649_2862636_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2861649 - 2862636
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTGTTTAAAT
Flanking Amino Acid:
LQIFRRADKNDDGKLSFEEF
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.9
0.54
1
68
41.6
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
69.5
0.69
1.8
88.96
35.8

Associated Gene:

Gene:
NECAB3
Ensembl Gene ID:
ENSAPLG00000011538
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012087
2860236 - 2878782
18547