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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2862746_2870323_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2862746 - 2870323
Intron Length:
7578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CACCATCTAACA
Flanking Amino Acid:
LFSGIDRRHSDNVDTEKLCD
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
45.1
-0.3
1.8
51.57
39.8

Associated Gene:

Gene:
NECAB3
Ensembl Gene ID:
ENSAPLG00000011538
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012087
2860236 - 2878782
18547