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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2877747_2878297_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2877747 - 2878297
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTCGT
5'SS Class:
major
3'SS Sequence:
CCTGTCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCTTGCTGACCG
Flanking Amino Acid:
EDTASKGRDEHILVAKRQIS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1.3
72.7
44.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75
0.56
0.8
68.7
31.7
Minor 5ss
31.4
-2.1
2.9
42.4
44.2
Minor BPS
44.8
-0.5
2.2
51.42
48.7

Associated Gene:

Gene:
NECAB3
Ensembl Gene ID:
ENSAPLG00000011538
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012087
2860236 - 2878782
18547