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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2886750_2887250_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
2886750 - 2887250
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTCCA
5'SS Class:
major
3'SS Sequence:
TTGCTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTGCTTTGAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
62.5
43.9
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
72
0.5
1
69.2
40.7
Minor 5ss
29.5
-2.4
2.6
26.4
35.7
Minor BPS
60.2
0.32
1.4
69.12
37.2

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011584
2885195 - 2902791
17597