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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2887550_2889963_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2887550 - 2889963
Intron Length:
2414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TGGGTCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCGTTCTGAAGT
Flanking Amino Acid:
VINEQEESTESCWNCGRKAS
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.4
0.55
1
70
41.4
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
50.2
0.08
1.8
64.76
45.7

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011584
2885195 - 2902791
17597
ENSAPLT00000037416
2885195 - 2929010
43816
ENSAPLT00000035740
2885195 - 2903286
18092
ENSAPLT00000034533
2885195 - 2937086
51892
ENSAPLT00000027815
2885195 - 2929579
44385