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Intron Name: Anas_platyrhynchos_platyrhynchos_21_2890611_2893185_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2890611 - 2893185

Intron Length:

2575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CCTGTCCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCAAC

U12 Branch Point Sequence:

CCTGTCCCAACA

Flanking Amino Acid:

SPSSSDSISSDSLREFSSRS

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

70.1

40.6

Major BPS

48.7

-0

1.3

56.4

38.8

Major PPT

68.2

0.41

0.9

62.2

33.5

Minor 5ss

-1.6

2.9

41.2

Minor BPS

45.3

-0.3

1.9

55.29

43.9

Associated Gene:

Gene:

CBFA2T2

Ensembl Gene ID:

ENSAPLG00000011108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034533

2885195 - 2937086

51892

ENSAPLT00000027815

2885195 - 2929579

44385

ENSAPLT00000011584

2885195 - 2902791

17597

ENSAPLT00000037416

2885195 - 2929010

43816

ENSAPLT00000035740

2885195 - 2903286

18092