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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2893382_2894516_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2893382 - 2894516
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
TAAAACTGAAAG
Flanking Amino Acid:
WADEWKHLDHALNCIMEMVE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
69.9
40.7
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
78.2
0.63
0.7
73
25.2
Minor 5ss
35
-1.7
3.2
47.6
41.5
Minor BPS
46
-0.4
1.8
50.51
42.1

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034533
2885195 - 2937086
51892
ENSAPLT00000027815
2885195 - 2929579
44385
ENSAPLT00000011584
2885195 - 2902791
17597
ENSAPLT00000037416
2885195 - 2929010
43816
ENSAPLT00000035740
2885195 - 2903286
18092