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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2894603_2895309_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2894603 - 2895309
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAGAG
5'SS Class:
major
3'SS Sequence:
TGGTTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GTCCATCTAACC
Flanking Amino Acid:
REIRDRHSSLGLNGGYQDEL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.4
38.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
78.6
0.64
1
72.9
42.2
Minor 5ss
24.8
-2.9
3.1
30
43
Minor BPS
47.4
-0.2
1.8
58.44
40

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027815
2885195 - 2929579
44385
ENSAPLT00000011584
2885195 - 2902791
17597
ENSAPLT00000037416
2885195 - 2929010
43816
ENSAPLT00000035740
2885195 - 2903286
18092
ENSAPLT00000034533
2885195 - 2937086
51892