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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2895564_2896182_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2895564 - 2896182
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACGAAT
U12 Branch Point Sequence:
GCGGCGCTAACG
Flanking Amino Acid:
NGNGKRHSPDRREDNSFERE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
53
0.07
1.3
61.7
34.1
Major PPT
70.4
0.46
1
61.9
44.4
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
41.2
-0.8
2.4
44.2
47.4

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027815
2885195 - 2929579
44385
ENSAPLT00000011584
2885195 - 2902791
17597
ENSAPLT00000037416
2885195 - 2929010
43816
ENSAPLT00000035740
2885195 - 2903286
18092
ENSAPLT00000034533
2885195 - 2937086
51892