Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2896365_2896859_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2896365 - 2896859

Intron Length:

495

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGACAGTG

5'SS Class:

major

3'SS Sequence:

GCCTGTTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCGTGAA

U12 Branch Point Sequence:

CCCGCGTGAAGC

Flanking Amino Acid:

LRPFVIPFLKANLPLLQREL

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

65.9

40.1

Major BPS

46.7

-0.2

1.4

42.3

Major PPT

77.5

0.62

0.9

68.2

42.3

Minor 5ss

34.1

-1.8

3.5

46.6

48.7

Minor BPS

38.3

-0.9

2.3

41.78

45.3

Associated Gene:

Gene:

CBFA2T2

Ensembl Gene ID:

ENSAPLG00000011108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034533

2885195 - 2937086

51892

ENSAPLT00000027815

2885195 - 2929579

44385

ENSAPLT00000011584

2885195 - 2902791

17597

ENSAPLT00000037416

2885195 - 2929010

43816

ENSAPLT00000035740

2885195 - 2903286

18092