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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2896950_2899154_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2896950 - 2899154
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCTTAATT
Flanking Amino Acid:
KVRTLVLALVNSTVTIEEFH
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68
42.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
91.9
0.94
0.6
91.8
19.1
Minor 5ss
39.8
-1.1
2.8
47.1
42.4
Minor BPS
78.1
0.96
1.1
84.43
36.6

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027815
2885195 - 2929579
44385
ENSAPLT00000011584
2885195 - 2902791
17597
ENSAPLT00000037416
2885195 - 2929010
43816
ENSAPLT00000035740
2885195 - 2903286
18092
ENSAPLT00000034533
2885195 - 2937086
51892