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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2899397_2902647_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2899397 - 2902647
Intron Length:
3251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGACGC
5'SS Class:
major
3'SS Sequence:
CTCTGCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
ACGCCGATAACG
Flanking Amino Acid:
PRPVSFTPAALPNGINHSPP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.3
60.8
44.4
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
33.7
-1.9
3.1
42.1
37.8
Minor BPS
43.4
-0.6
2.3
48.05
45

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027815
2885195 - 2929579
44385
ENSAPLT00000011584
2885195 - 2902791
17597
ENSAPLT00000037416
2885195 - 2929010
43816
ENSAPLT00000035740
2885195 - 2903286
18092
ENSAPLT00000034533
2885195 - 2937086
51892