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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2902792_2903198_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2902792 - 2903198
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTCTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTGTCAATAATG
Flanking Amino Acid:
EGEKGQKHSIFAGEKRVPVM
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
69.6
37.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
83.3
0.75
0.9
79.1
32.9
Minor 5ss
40.9
-1
3
55.1
43.4
Minor BPS
48.8
-0.2
2
57.29
44.4

Associated Gene:

Gene:
CBFA2T2
Ensembl Gene ID:
ENSAPLG00000011108
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035740
2885195 - 2903286
18092