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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2960470_2965322_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2960470 - 2965322
Intron Length:
4853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATGCTCTCACCG
Flanking Amino Acid:
KKTGKEVVLEVKYMKEISPY
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
84.6
0.78
0.7
76.4
32.2
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
46
-0.4
1.8
51.02
43.3

Associated Gene:

Gene:
SNTA1
Ensembl Gene ID:
ENSAPLG00000030952
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046744
2958033 - 2967823
9791
ENSAPLT00000033130
2958033 - 2968196
10164
ENSAPLT00000032895
2958033 - 2968196
10164