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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2966024_2967017_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2966024 - 2967017
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTCC
5'SS Class:
major
3'SS Sequence:
TCCCTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CACCCCTGAGCC
Flanking Amino Acid:
PVHSYPLIATSLQLEGAGLH
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.5
39
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
72.9
0.52
0.8
64.4
36.6
Minor 5ss
36.6
-1.5
3.5
50.4
46.4
Minor BPS
47.7
-0.1
1.7
54.14
43.2

Associated Gene:

Gene:
SNTA1
Ensembl Gene ID:
ENSAPLG00000030952
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033130
2958033 - 2968196
10164