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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2967206_2967348_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2967206 - 2967348
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTCCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATTGCAAAT
Flanking Amino Acid:
LDFGGPEGEIQLDLHSCPKT
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
58.4
43.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.9
0.81
0.7
80.7
24.6
Minor 5ss
35.7
-1.6
2.8
40.8
40
Minor BPS
42
-0.5
2.1
61.26
42.8

Associated Gene:

Gene:
SNTA1
Ensembl Gene ID:
ENSAPLG00000030952
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046744
2958033 - 2967823
9791
ENSAPLT00000033130
2958033 - 2968196
10164
ENSAPLT00000032895
2958033 - 2968196
10164