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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3012824_3014592_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3012824 - 3014592
Intron Length:
1769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
CTTTCCTCCACC
Flanking Amino Acid:
PHELLASRAAGLFAYFV*
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
68.6
0.42
0.8
61.6
28.6
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
60.5
0.31
2
74.56
42.5

Associated Gene:

Gene:
TOX2
Ensembl Gene ID:
ENSAPLG00000009436
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009842
3012801 - 3134143
121343